fix: integrate recent hook and docs PRs (#1905)

Integrates useful changes from #1882, #1884, #1889, #1893, #1898, #1899, and #1903:
- fix rule install docs to preserve language directories
- correct Ruby security command examples
- harden dev-server hook command-substitution parsing
- add Prisma patterns skill and catalog/package surfaces
- allow first-time protected config creation while blocking existing configs
- read cost metrics from Stop hook transcripts
- emit suggest-compact additionalContext on stdout

Co-authored-by: Jamkris <dltmdgus1412@gmail.com>
Co-authored-by: Levi-Evan <levishantz@gmail.com>
Co-authored-by: gaurav0107 <gauravdubey0107@gmail.com>
Co-authored-by: richm-spp <richard.millar@salarypackagingplus.com.au>
Co-authored-by: zomia <zomians@outlook.jp>
Co-authored-by: donghyeun02 <donghyeun02@gmail.com>

manifests/install-modules.json

@@ -199,7 +199,8 @@
         "skills/database-migrations",
         "skills/jpa-patterns",
         "skills/mysql-patterns",
-        "skills/postgres-patterns"
+        "skills/postgres-patterns",
+        "skills/prisma-patterns"
       ],
       "targets": [
         "claude",