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fix(docs): repair healthcare eval harness examples

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This commit is contained in:
Affaan Mustafa
2026-03-29 00:04:36 -04:00
parent c5e3658ba6
commit 9406f35fab
3 changed files with 43 additions and 20 deletions
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45
skills/healthcare-eval-harness/SKILL.md
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@@ -57,7 +57,16 @@ npx jest --testPathPattern='tests/data-integrity' --bail --ci
Tests end-to-end flows: encounter lifecycle, template rendering, medication sets, drug/diagnosis search, prescription PDF, red flag alerts.
```bash
npx jest --testPathPattern='tests/clinical' --ci 2>&1 | node scripts/check-pass-rate.js 95
tmp_json=$(mktemp)
npx jest --testPathPattern='tests/clinical' --ci --json --outputFile="$tmp_json" || true
total=$(jq '.numTotalTests // 0' "$tmp_json")
passed=$(jq '.numPassedTests // 0' "$tmp_json")
if [ "$total" -eq 0 ]; then
echo "No clinical tests found" >&2
exit 1
fi
rate=$(echo "scale=2; $passed * 100 / $total" | bc)
echo "Clinical pass rate: ${rate}% ($passed/$total)"
```
**5. Integration Compliance (HIGH — 95%+ required)**
@@ -65,7 +74,16 @@ npx jest --testPathPattern='tests/clinical' --ci 2>&1 | node scripts/check-pass-
Tests external systems: HL7 message parsing (v2.x), FHIR validation, lab result mapping, malformed message handling.
```bash
npx jest --testPathPattern='tests/integration' --ci 2>&1 | node scripts/check-pass-rate.js 95
tmp_json=$(mktemp)
npx jest --testPathPattern='tests/integration' --ci --json --outputFile="$tmp_json" || true
total=$(jq '.numTotalTests // 0' "$tmp_json")
passed=$(jq '.numPassedTests // 0' "$tmp_json")
if [ "$total" -eq 0 ]; then
echo "No integration tests found" >&2
exit 1
fi
rate=$(echo "scale=2; $passed * 100 / $total" | bc)
echo "Integration pass rate: ${rate}% ($passed/$total)"
```
### Pass/Fail Matrix
@@ -108,9 +126,10 @@ jobs:
# HIGH gates — 95%+ required
- name: Clinical Workflows
run: |
RESULT=$(npx jest --testPathPattern='tests/clinical' --ci --json 2>&1) || true
TOTAL=$(echo "$RESULT" | jq '.numTotalTests // 0')
PASSED=$(echo "$RESULT" | jq '.numPassedTests // 0')
TMP_JSON=$(mktemp)
npx jest --testPathPattern='tests/clinical' --ci --json --outputFile="$TMP_JSON" || true
TOTAL=$(jq '.numTotalTests // 0' "$TMP_JSON")
PASSED=$(jq '.numPassedTests // 0' "$TMP_JSON")
if [ "$TOTAL" -eq 0 ]; then
echo "::error::No clinical tests found"; exit 1
fi
@@ -122,9 +141,10 @@ jobs:
- name: Integration Compliance
run: |
RESULT=$(npx jest --testPathPattern='tests/integration' --ci --json 2>&1) || true
TOTAL=$(echo "$RESULT" | jq '.numTotalTests // 0')
PASSED=$(echo "$RESULT" | jq '.numPassedTests // 0')
TMP_JSON=$(mktemp)
npx jest --testPathPattern='tests/integration' --ci --json --outputFile="$TMP_JSON" || true
TOTAL=$(jq '.numTotalTests // 0' "$TMP_JSON")
PASSED=$(jq '.numPassedTests // 0' "$TMP_JSON")
if [ "$TOTAL" -eq 0 ]; then
echo "::error::No integration tests found"; exit 1
fi
@@ -157,8 +177,13 @@ npx jest --testPathPattern='tests/data-integrity' --bail --ci
### Example 2: Check HIGH Gate Pass Rate
```bash
npx jest --testPathPattern='tests/clinical' --ci --json | \
jq '{passed: .numPassedTests, total: .numTotalTests, rate: (.numPassedTests/.numTotalTests*100)}'
tmp_json=$(mktemp)
npx jest --testPathPattern='tests/clinical' --ci --json --outputFile="$tmp_json" || true
jq '{
passed: (.numPassedTests // 0),
total: (.numTotalTests // 0),
rate: (if (.numTotalTests // 0) == 0 then 0 else ((.numPassedTests // 0) / (.numTotalTests // 1) * 100) end)
}' "$tmp_json"
# Expected: { "passed": 21, "total": 22, "rate": 95.45 }
```