- Add options={} parameter to run() to match run-with-flags.js contract
- Remove case-insensitive flag from extension pre-filter for consistency
with ADHOC_FILENAMES regex (both now case-sensitive)
- Expand warning text to list more structured paths
- Add test cases for uppercase extensions (TODO.MD, NOTES.TXT)
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Signed-off-by: Lidang-Jiang <lidangjiang@gmail.com>
Replace the broad allowlist approach with a targeted denylist that only
warns on known ad-hoc filenames (NOTES, TODO, SCRATCH, TEMP, DRAFT,
BRAINSTORM, SPIKE, DEBUG, WIP) outside structured directories. This
eliminates false positives for legitimate markdown-heavy workflows while
still catching impulse documentation files.
Closes#988
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Signed-off-by: Lidang-Jiang <lidangjiang@gmail.com>
Extracted help text into getHelpText() and write both the error message
and usage help to stderr via process.stderr.write(). This ensures that
when output is redirected (e.g. 2>errors.txt), both the error and the
guidance appear in the same stream.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Running install.ps1/install.sh with no arguments gave a cryptic error
with no guidance. Now the usage help is printed after the error so users
know what arguments to pass.
Also added --profile full as the recommended install option in the README
quick-start section, which was previously undocumented.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Add @latest suffix to '@upstash/context7-mcp' in ECC_SERVERS so the
generated merge spec matches .codex/config.toml exactly, preventing
configDiffers from flagging false drift on --update-mcp runs.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Signed-off-by: Lidang-Jiang <lidangjiang@gmail.com>
The rg pattern anchored at line start (^persistent_instructions) would
miss indented TOML entries. Use ^\s* prefix to match both top-level and
indented configurations.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Signed-off-by: Lidang-Jiang <lidangjiang@gmail.com>
On Windows (native cmd/PowerShell), process.env.HOME is undefined.
Seven CLI entry points and two library files pass process.env.HOME
directly as homeDir without a cross-platform fallback, causing all
path resolutions to silently fail (resolving to "undefined/.claude/...").
Node.js os.homedir() correctly handles all platforms (HOME on Unix,
USERPROFILE on Windows, OS-level fallback). The project already uses
this pattern in scripts/lib/state-store/index.js and has a getHomeDir()
utility in scripts/lib/utils.js, but it was not applied consistently.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Signed-off-by: Lidang-Jiang <lidangjiang@gmail.com>
The global sanity check (check-codex-global-state.sh) hard-fails when
persistent_instructions is missing from ~/.codex/config.toml, but neither
the baseline .codex/config.toml nor the sync script ever define this field.
This causes a clean install to report a failing sanity check even though the
sync otherwise succeeds (#967).
- Add persistent_instructions to the baseline .codex/config.toml so that
users who cp the config get a working default.
- Downgrade the sanity check from fail to warn, since persistent_instructions
is additive and optional — users who rely solely on AGENTS.md should not be
blocked.
Fixes#967 (persistent_instructions part; context7 naming addressed by #970)
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Signed-off-by: Lidang-Jiang <lidangjiang@gmail.com>
Reviewers identified that merge-mcp-config.js --update-mcp would
silently strip the startup_timeout_sec from config.toml because the
ECC_SERVERS spec did not include it. Add startup_timeout_sec = 30 to
playwright, context7-mcp, github, memory, and sequential-thinking.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Signed-off-by: Lidang-Jiang <lidangjiang@gmail.com>
Codex CLI reads skills natively from ~/.agents/skills/ (installed by
ECC installer / npx skills). The sync script was redundantly copying
the same skills from .agents/skills/ to ~/.codex/skills/.
Changes:
- Remove skill copy loop, variables, and path validation from sync script
- Update sanity checker to validate ~/.agents/skills/ instead of
~/.codex/skills/, downgrade missing skills from FAIL to WARN
- Update test assertions to verify skill sync removal
Generated with [Claude Code](https://claude.ai/code)
via [Happy](https://happy.engineering)
Co-Authored-By: Claude <noreply@anthropic.com>
Co-Authored-By: Happy <yesreply@happy.engineering>
- Check spawnSync result and log warning on failure via stderr
- Restore osascript timeout to 5000ms, increase hook deadline to 10s
for sufficient headroom
- Replace JSON.stringify with curly quote substitution for AppleScript
compatibility (AppleScript does not support \" backslash escapes)
- Reduce spawnSync timeout from 5000ms to 3000ms to leave headroom
within the 5s hook deadline
Add a new Stop hook that sends a native macOS notification with the
task summary (first line of last_assistant_message) when Claude finishes
responding. Uses osascript via spawnSync for shell injection safety.
Supports run-with-flags fast require() path. Only active on standard
and strict profiles; silently skips on non-macOS platforms.
* feat(hooks): add config protection hook to block linter config manipulation
Agents frequently modify linter/formatter configs (.eslintrc, biome.json,
.prettierrc, .ruff.toml, etc.) to make checks pass instead of fixing
the actual code.
This PreToolUse hook intercepts Write/Edit/MultiEdit calls targeting
known config files and blocks them with a steering message that directs
the agent to fix the source code instead.
Covers: ESLint, Prettier, Biome, Ruff, ShellCheck, Stylelint, and
Markdownlint configs.
Fixes#733
* Address review: fix dead code, add missing configs, export run()
- Removed pyproject.toml from PROTECTED_FILES (was dead code since
it was also in PARTIAL_CONFIG_FILES). Added comment explaining why
it's intentionally excluded.
- Removed PARTIAL_CONFIG_FILES entirely (no longer needed).
- Added missing ESLint v9 TypeScript flat configs: eslint.config.ts,
eslint.config.mts, eslint.config.cts
- Added missing Prettier ESM config: prettier.config.mjs
- Exported run() function for in-process execution via run-with-flags,
avoiding the spawnSync overhead (~50-100ms per call).
* Handle stdin truncation gracefully, log warning instead of fail-open
If stdin exceeds 1MB, the JSON would be malformed and the catch
block would silently pass through. Now we detect truncation and
log a warning. The in-process run() path is not affected.
* fix: replace bash TOML surgery with Node add-only MCP merge
The old sync script used awk/sed to remove and re-append MCP server
sections in config.toml, causing credential extraction races, duplicate
TOML tables, and 3 fragile code paths with 9 remove_section_inplace
calls each.
Replace with a Node script (scripts/codex/merge-mcp-config.js) that
uses @iarna/toml to parse the config, then appends only missing ECC
servers — preserving all existing content byte-for-byte. Warns on
config drift, supports legacy aliases (context7 → context7-mcp), and
adds --update-mcp flag for explicit refresh.
Generated with [Claude Code](https://claude.ai/code)
via [Happy](https://happy.engineering)
Co-Authored-By: Claude <noreply@anthropic.com>
Co-Authored-By: Happy <yesreply@happy.engineering>
* fix: address PR #723 review findings for Codex MCP merge
- Use package-manager abstraction (scripts/lib/package-manager.js)
instead of hardcoding pnpm — respects CLAUDE_PACKAGE_MANAGER,
lock files, and project config
- Add Yarn 1.x fallback to npx (yarn dlx unsupported in classic)
- Add missing exa server to match .codex/config.toml baseline
- Wire up findSubSections for --update-mcp nested subtable removal
(fixes Greptile P1: Object.keys only returned top-level keys)
- Fix resolvedLabel to prefer canonical entry over legacy alias
when both exist (fixes context7/context7-mcp spurious warning)
- Fix removeSectionFromText to handle inline TOML comments
- Fix dry-run + --update-mcp to show removals before early return
- Update README parity table: 4 → 7 servers, TOML-parser-based
- Add non-npm install variants to README Codex quick start
- Update package-lock.json for @iarna/toml
Generated with [Claude Code](https://claude.ai/code)
via [Happy](https://happy.engineering)
Co-Authored-By: Claude <noreply@anthropic.com>
Co-Authored-By: Happy <yesreply@happy.engineering>
* fix: address PR #723 review comments (preflight, marker validation)
- Add Node.js and merge-mcp-config.js to preflight checks so the
script fails fast before partial writes (CodeRabbit)
- Validate marker counts: require exactly 1 BEGIN + 1 END in correct
order for clean replacement (CodeRabbit)
- Corrupted markers: strip all marker lines and re-append fresh block,
preserving user content outside markers instead of overwriting
- Move MCP_MERGE_SCRIPT to preflight section, remove duplicate
Generated with [Claude Code](https://claude.ai/code)
via [Happy](https://happy.engineering)
Co-Authored-By: Claude <noreply@anthropic.com>
Co-Authored-By: Happy <yesreply@happy.engineering>
---------
Co-authored-by: Claude <noreply@anthropic.com>
Co-authored-by: Happy <yesreply@happy.engineering>
* fix(install): add rust, cpp, csharp to legacy language alias map
The legacy installer compatibility layer in install-manifests.js was
missing entries for rust, cpp, and csharp — languages that have
rules/ directories and (for rust/cpp) install-components.json entries.
Running `./install.sh rust` fails with "Unknown legacy language: rust"
because LEGACY_LANGUAGE_ALIAS_TO_CANONICAL and
LEGACY_LANGUAGE_EXTRA_MODULE_IDS didn't include these languages.
Fixes the issue reported in #694 by @mpiton.
Generated with [Claude Code](https://claude.ai/code)
via [Happy](https://happy.engineering)
Co-Authored-By: Claude <noreply@anthropic.com>
Co-Authored-By: Happy <yesreply@happy.engineering>
* fix(install): complete csharp legacy support and add resolution tests
- Add lang:csharp component to install-components.json with
framework-language module (matching cpp/rust pattern)
- Update csharp mapping in LEGACY_LANGUAGE_EXTRA_MODULE_IDS from
empty array to ['framework-language']
- Add end-to-end resolution tests for rust, cpp, and csharp verifying
framework-language module is included in resolved moduleIds
Addresses review feedback from Copilot, Greptile, CodeRabbit, and Cubic.
Generated with [Claude Code](https://claude.ai/code)
via [Happy](https://happy.engineering)
Co-Authored-By: Claude <noreply@anthropic.com>
Co-Authored-By: Happy <yesreply@happy.engineering>
---------
Co-authored-by: Claude <noreply@anthropic.com>
Co-authored-by: Happy <yesreply@happy.engineering>
The sync script previously overwrote ~/.codex/AGENTS.md on every run,
destroying any user-authored content. This adds marker-based merging
(<!-- BEGIN ECC --> / <!-- END ECC -->) so only the ECC-managed section
is replaced on subsequent runs, preserving user content outside the
markers.
Merge logic:
- No file → create with markers
- Both markers present (ordered, CRLF-safe) → replace only the ECC section
- BEGIN without END (corrupted) → full replace (backup saved)
- No markers at all → append ECC block (preserves existing content)
Also fixes:
- Symlink preservation: uses cat > instead of mv to write through symlinks
- CRLF handling: strips \r in marker detection to handle Windows-edited files
- Marker ordering: validates BEGIN appears before END, not just that both exist
The legacy heading-match heuristic was intentionally removed per council
review: any unmarked file is either user-authored (append is safe) or
legacy ECC-generated (duplicates once, deduplicates on next run via
markers). A timestamped backup is always saved before any mutation.
Generated with [Claude Code](https://claude.ai/code)
via [Happy](https://happy.engineering)
Co-authored-by: Claude <noreply@anthropic.com>
Co-authored-by: Happy <yesreply@happy.engineering>
* feat: add agent description compression with lazy loading (#491)
Agent descriptions consume ~26k tokens (121KB across 27 agents). This adds
a compression library with three modes:
- catalog: metadata only (~2-3k tokens) for agent selection
- summary: metadata + first paragraph (~4-5k tokens) for routing
- full: no compression, for when agent is invoked
Includes lazy-load function to fetch full agent body on demand.
21 tests covering parsing, compression, filtering, and real agents dir.
* fix: update JSDoc to include all stats fields in buildAgentCatalog
Add compressedBytes and mode to the documented return type, matching
the actual implementation.
When ECC is installed as a Claude Code plugin via the marketplace,
scripts live in the plugin cache (~/.claude/plugins/cache/...) but
commands fallback to ~/.claude/ which doesn't have the scripts.
Add resolve-ecc-root.js with a 3-step fallback chain:
1. CLAUDE_PLUGIN_ROOT env var (existing)
2. Standard install at ~/.claude/ (existing)
3. NEW: auto-scan the plugin cache directory
Update sessions.md and skill-health.md commands to use the new
inline resolver. Includes 15 tests covering all fallback paths
including env var priority, standard install, cache discovery,
and the compact INLINE_RESOLVE used in command .md files.
